STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_25828Uroporphyrinogen decarboxylase 1, chloroplastic. (338 aa)    
Predicted Functional Partners:
ACMD2_09947
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
 
 0.981
ACMD2_02771
Porphobilinogen deaminase, chloroplastic.
 
 0.974
ACMD2_15920
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
 
 0.965
ACMD2_12342
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 
 0.958
ACMD2_05639
Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
   
 
 0.894
ACMD2_04912
Uroporphyrinogen decarboxylase 2, chloroplastic.
  
 
 
0.883
ACMD2_24189
Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic.
  
 0.880
ACMD2_14907
Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic.
  
 0.880
ACMD2_18800
Uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
    
 0.857
ACMD2_18794
Siroheme synthase 2; Belongs to the precorrin methyltransferase family.
    
 0.857
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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