Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_25028Pentatricopeptide repeat-containing protein, chloroplastic. (464 aa)    
Predicted Functional Partners:
ACMD2_07861
Cyclin-H1-1; Belongs to the cyclin family.
   
 0.983
ACMD2_02951
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.964
ACMD2_02955
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.964
ACMD2_06720
DNA repair helicase UVH6.
    
 0.962
ACMD2_21328
DNA repair helicase UVH6.
    
 0.962
ACMD2_08064
Putative RNA polymerase II transcription factor B subunit 1-1.
    
 0.962
ACMD2_08059
Putative RNA polymerase II transcription factor B subunit 1-1.
    
 0.962
ACMD2_26831
Cyclin-dependent kinase D-1.
    
 0.948
ACMD2_23532
Cyclin-dependent kinase D-1.
    
 0.948
ACMD2_23531
Cyclin-dependent kinase D-1.
    
 0.948
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
Server load: low (18%) [HD]