Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_1477460S ribosomal protein L13a-4; Belongs to the universal ribosomal protein uL13 family. (197 aa)    
Predicted Functional Partners:
ACMD2_05338
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
  
 0.993
ACMD2_07476
60S ribosomal protein L32-1.
  
 0.993
ACMD2_00733
60S ribosomal protein L5.
  
 0.992
ACMD2_06439
60S ribosomal protein L28-2.
   
 0.991
ACMD2_15022
60S ribosomal protein L9.
  
 0.989
ACMD2_09666
60S ribosomal protein L10.
 
 0.987
ACMD2_08325
60S ribosomal protein L10.
 
 0.987
ACMD2_03073
40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
  
 0.986
ACMD2_02470
Ubiquitin-40S ribosomal protein S27a-3.
   
 0.985
ACMD2_13802
40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
  
 0.985
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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