STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_08518THO complex subunit 4A. (252 aa)    
Predicted Functional Partners:
ACMD2_06442
DEAD-box ATP-dependent RNA helicase 56.
   
 0.994
ACMD2_10090
RNA-binding protein 8A.
   
 0.979
ACMD2_11262
Nuclear cap-binding protein subunit 1.
    
 0.976
ACMD2_04863
THO complex subunit 5B.
   
 0.973
ACMD2_20893
Protein mago nashi.
   
 0.969
ACMD2_20817
Protein mago nashi.
   
 0.969
ACMD2_09096
THO complex subunit 2.
   
 0.967
ACMD2_21126
THO complex subunit 2.
   
 0.967
ACMD2_15448
THO complex subunit 2.
   
 0.967
ACMD2_10578
Regulator of nonsense transcripts UPF3.
    
 0.965
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.