STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_01458Pre-mRNA-splicing factor SYF1. (918 aa)    
Predicted Functional Partners:
ACMD2_05654
SNW/SKI-interacting protein.
   
 0.975
ACMD2_01964
Pre-mRNA-processing factor 19.
   
 0.972
ACMD2_06940
Intron-binding protein aquarius.
   
 0.971
ACMD2_11329
Pre-mRNA-splicing factor syf2.
    
 0.968
ACMD2_04835
Crooked neck-like protein 1.
   
0.959
ACMD2_04836
Crooked neck-like protein 1.
   
0.959
ACMD2_10215
Pre-mRNA-splicing factor CWC.
   
 
 0.949
ACMD2_11328
Uncharacterized protein.
    
 0.944
ACMD2_00364
Cell division cycle 5-like protein.
   
 
 0.939
ACMD2_19975
Zinc finger CCCH domain-containing protein 40.
   
 0.938
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.