STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_10475Nuclear transport factor 2. (123 aa)    
Predicted Functional Partners:
ACMD2_08692
DNA excision repair protein ERCC-1.
   
 0.734
ACMD2_06715
NPL4-like protein.
    
 0.723
ACMD2_20363
60S ribosomal protein L10a.
   
 0.709
ACMD2_09036
60S ribosomal protein L10a.
   
 0.709
ACMD2_18501
Fanconi anemia group I protein.
   
 0.686
ACMD2_05677
DNA repair endonuclease UVH1.
    
 0.636
ACMD2_05678
PPIase cyclophilin-type domain-containing protein.
    
 0.636
ACMD2_02062
50S ribosomal protein L1.
   
 0.558
ACMD2_02470
Ubiquitin-40S ribosomal protein S27a-3.
   
  0.556
ACMD2_01634
Crossover junction endonuclease MUS81.
    
 0.536
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.