STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_16039Uncharacterized protein. (552 aa)    
Predicted Functional Partners:
ACMD2_08436
Replication protein A 32 kDa subunit B.
    
 0.540
ACMD2_16819
Nicotinamide adenine dinucleotide transporter 1, chloroplastic; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
 0.523
ACMD2_06715
NPL4-like protein.
    
  0.461
ACMD2_22875
Protein ALWAYS EARLY 3.
    
 0.459
ACMD2_17247
Protein ALWAYS EARLY 3.
    
 0.459
ACMD2_08692
DNA excision repair protein ERCC-1.
    
  0.438
ACMD2_05024
DUF1929 domain-containing protein.
  
 
  0.437
MED10
Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
  0.435
ACMD2_13424
Mediator of RNA polymerase II transcription subunit 6.
    
  0.434
ACMD2_19707
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
    
  0.433
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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