ACMD2_15533 protein (Ananas comosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACMD2_15533

U-box domain-containing protein 35. (737 aa)

Predicted Functional Partners:

ACMD2_08419

0.504

ACMD2_13119

0.503

ACMD2_00524

0.493

ACMD2_11011

0.493

ACMD2_03797

0.478

ACMD2_22598

0.478

ACMD2_22100

0.467

ACMD2_08991

0.467

ACMD2_15956

0.467

ACMD2_06339

0.442

Your Current Organism:

Ananas comosus

NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACMD2_00524	ACMD2_15533	A0A199UFP1	A0A199VN42	1-acyl-sn-glycerol-3-phosphate acyltransferase.	U-box domain-containing protein 35.	0.493
ACMD2_03797	ACMD2_15533	A0A199UDZ3	A0A199VN42	Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.	U-box domain-containing protein 35.	0.478
ACMD2_06339	ACMD2_15533	A0A199W0A1	A0A199VN42	3-phosphoinositide-dependent protein kinase 1.	U-box domain-containing protein 35.	0.442
ACMD2_08419	ACMD2_15533	A0A199URM3	A0A199VN42	La-related protein 6C.	U-box domain-containing protein 35.	0.504
ACMD2_08419	ACMD2_15956	A0A199URM3	A0A199W6P6	La-related protein 6C.	E3 ubiquitin-protein ligase MIEL1.	0.461
ACMD2_08991	ACMD2_15533	A0A199V903	A0A199VN42	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.	U-box domain-containing protein 35.	0.467
ACMD2_11011	ACMD2_15533	A0A199W061	A0A199VN42	1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.	U-box domain-containing protein 35.	0.493
ACMD2_13119	ACMD2_15533	A0A199UV47	A0A199VN42	Putative 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial.	U-box domain-containing protein 35.	0.503
ACMD2_15533	ACMD2_00524	A0A199VN42	A0A199UFP1	U-box domain-containing protein 35.	1-acyl-sn-glycerol-3-phosphate acyltransferase.	0.493
ACMD2_15533	ACMD2_03797	A0A199VN42	A0A199UDZ3	U-box domain-containing protein 35.	Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.	0.478
ACMD2_15533	ACMD2_06339	A0A199VN42	A0A199W0A1	U-box domain-containing protein 35.	3-phosphoinositide-dependent protein kinase 1.	0.442
ACMD2_15533	ACMD2_08419	A0A199VN42	A0A199URM3	U-box domain-containing protein 35.	La-related protein 6C.	0.504
ACMD2_15533	ACMD2_08991	A0A199VN42	A0A199V903	U-box domain-containing protein 35.	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.	0.467
ACMD2_15533	ACMD2_11011	A0A199VN42	A0A199W061	U-box domain-containing protein 35.	1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.	0.493
ACMD2_15533	ACMD2_13119	A0A199VN42	A0A199UV47	U-box domain-containing protein 35.	Putative 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial.	0.503
ACMD2_15533	ACMD2_15956	A0A199VN42	A0A199W6P6	U-box domain-containing protein 35.	E3 ubiquitin-protein ligase MIEL1.	0.467
ACMD2_15533	ACMD2_22100	A0A199VN42	A0A199V352	U-box domain-containing protein 35.	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.	0.467
ACMD2_15533	ACMD2_22598	A0A199VN42	A0A199UWX8	U-box domain-containing protein 35.	Protein DETOXIFICATION 45, chloroplastic.	0.478
ACMD2_15956	ACMD2_08419	A0A199W6P6	A0A199URM3	E3 ubiquitin-protein ligase MIEL1.	La-related protein 6C.	0.461
ACMD2_15956	ACMD2_15533	A0A199W6P6	A0A199VN42	E3 ubiquitin-protein ligase MIEL1.	U-box domain-containing protein 35.	0.467