STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK46100.1Siderophore synthetase component. (513 aa)    
Predicted Functional Partners:
SEK46004.1
Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
 
 0.956
SEK46055.1
Siderophore synthetase component.
 
     0.954
SEK46137.1
Biotin carboxylase.
 
     0.951
SEN60647.1
Siderophore synthetase component.
 
     0.776
SEK44676.1
Hypothetical protein.
  
     0.733
SEL53349.1
Quinol monooxygenase YgiN.
  
     0.730
SEN06696.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
     0.727
SEN39788.1
DNA helicase HerA, contains HAS-barrel and ATPase domains.
  
     0.686
SEM87597.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family.
  
    0.680
SEL16243.1
Tetratricopeptide repeat-containing protein.
  
     0.676
Your Current Organism:
Nonomuraea pusilla
NCBI taxonomy Id: 46177
Other names: ATCC 27296, Actinomadura pusilla, BCRC 11619, CBS 262.72, CCRC 11619, CCRC:11619, CECT 3284, CIP 106954, DSM 43357, IFO 14684, IMET 9586, JCM 3144, KCTC 9278, Microtetraspora pusilla, N. pusilla, NBRC 14684, NCIMB 11116, NRRL B-16126, Nonomuria pusilla
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