STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK88950.1DNA polymerase (family 10). (559 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 0.954
SEL96747.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
    
 0.909
SEM91749.1
D,D-heptose 1,7-bisphosphate phosphatase.
    
 0.909
SEK45271.1
ATP dependent DNA ligase C terminal region.
  
 0.900
SEL80172.1
5'-3' exonuclease.
   
 0.888
SEL70383.1
Exonuclease III.
   
 0.871
SEN62405.1
Exodeoxyribonuclease-3.
   
 0.871
SEK98478.1
ATP-dependent DNA ligase.
 
 0.848
SEK45323.1
Hypothetical protein.
  
 0.824
SEL26647.1
Bifunctional non-homologous end joining protein LigD.
  
 0.824
Your Current Organism:
Nonomuraea pusilla
NCBI taxonomy Id: 46177
Other names: ATCC 27296, Actinomadura pusilla, BCRC 11619, CBS 262.72, CCRC 11619, CCRC:11619, CECT 3284, CIP 106954, DSM 43357, IFO 14684, IMET 9586, JCM 3144, KCTC 9278, Microtetraspora pusilla, N. pusilla, NBRC 14684, NCIMB 11116, NRRL B-16126, Nonomuria pusilla
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