STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL86238.1Predicted arabinose efflux permease, MFS family. (390 aa)    
Predicted Functional Partners:
SEL86266.1
Hypothetical protein.
 
     0.894
SEM70232.1
Transcriptional regulator, ArsR family.
  
     0.614
SEM04715.1
TadE-like protein.
  
     0.535
SEN22765.1
Phosphotransferase enzyme family protein.
  
     0.535
SEL67393.1
Catechol 2,3-dioxygenase.
  
     0.532
SEN29725.1
Predicted acetyltransferase.
  
    0.510
SEL51564.1
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
  
     0.499
SEL03269.1
Hypothetical protein.
  
     0.463
SEM41844.1
Regulatory protein, luxR family.
  
     0.450
SEN77625.1
PA domain-containing protein; Belongs to the peptidase S8 family.
  
     0.445
Your Current Organism:
Nonomuraea pusilla
NCBI taxonomy Id: 46177
Other names: ATCC 27296, Actinomadura pusilla, BCRC 11619, CBS 262.72, CCRC 11619, CCRC:11619, CECT 3284, CIP 106954, DSM 43357, IFO 14684, IMET 9586, JCM 3144, KCTC 9278, Microtetraspora pusilla, N. pusilla, NBRC 14684, NCIMB 11116, NRRL B-16126, Nonomuria pusilla
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