STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM09005.1Protein of unknown function. (497 aa)    
Predicted Functional Partners:
SEM09037.1
Hypothetical protein.
 
     0.682
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
       0.517
SEM29521.1
Methyltransferase domain.
  
     0.459
SEL70849.1
Methyltransferase domain-containing protein.
  
     0.428
SEL49025.1
Hypothetical protein.
  
     0.411
SEN46316.1
Imidazolonepropionase.
 
    0.409
SEM53922.1
Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
  
     0.406
SEL65170.1
Hypothetical protein.
  
     0.405
SEM24240.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
    0.400
Your Current Organism:
Nonomuraea pusilla
NCBI taxonomy Id: 46177
Other names: ATCC 27296, Actinomadura pusilla, BCRC 11619, CBS 262.72, CCRC 11619, CCRC:11619, CECT 3284, CIP 106954, DSM 43357, IFO 14684, IMET 9586, JCM 3144, KCTC 9278, Microtetraspora pusilla, N. pusilla, NBRC 14684, NCIMB 11116, NRRL B-16126, Nonomuria pusilla
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