STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM35753.1Heparinase II/III-like protein. (670 aa)    
Predicted Functional Partners:
SEM35727.1
alpha-L-fucosidase.
 
     0.895
SEM35845.1
Right handed beta helix region.
 
   
 0.687
SEN60718.1
Sialidase-1.
  
  
  0.679
SEN66348.1
Beta-galactosidase.
  
     0.600
SEM93246.1
alpha-L-rhamnosidase.
 
  
  0.595
SEN76956.1
Hypothetical protein.
 
     0.588
SEL56152.1
alpha-L-fucosidase.
  
     0.559
SEN03937.1
Hyaluronate lyase.
 
  
 0.559
SEL85453.1
chondroitin-sulfate-ABC endolyase/exolyase.
 
  
 0.545
SEM35696.1
Regulator of RNase E activity RraA.
       0.545
Your Current Organism:
Nonomuraea pusilla
NCBI taxonomy Id: 46177
Other names: ATCC 27296, Actinomadura pusilla, BCRC 11619, CBS 262.72, CCRC 11619, CCRC:11619, CECT 3284, CIP 106954, DSM 43357, IFO 14684, IMET 9586, JCM 3144, KCTC 9278, Microtetraspora pusilla, N. pusilla, NBRC 14684, NCIMB 11116, NRRL B-16126, Nonomuria pusilla
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