STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM68217.1Sugar lactone lactonase YvrE. (288 aa)    
Predicted Functional Partners:
SEM68192.1
Galactonate dehydratase.
 
  
  0.845
SEM69344.1
Transcriptional regulator, IclR family.
      0.749
SEM68163.1
Nucleoside-diphosphate-sugar epimerase.
       0.661
SEM67952.1
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
  
  0.646
edd
6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
  
  0.564
ilvD
Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
    
  0.508
SEM68132.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
       0.503
SEM68268.1
MoxR-like ATPase.
       0.422
SEM68296.1
Hypothetical protein.
       0.422
SEL87587.1
Enterochelin esterase.
  
  
  0.420
Your Current Organism:
Nonomuraea pusilla
NCBI taxonomy Id: 46177
Other names: ATCC 27296, Actinomadura pusilla, BCRC 11619, CBS 262.72, CCRC 11619, CCRC:11619, CECT 3284, CIP 106954, DSM 43357, IFO 14684, IMET 9586, JCM 3144, KCTC 9278, Microtetraspora pusilla, N. pusilla, NBRC 14684, NCIMB 11116, NRRL B-16126, Nonomuria pusilla
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