STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM84875.1HD domain-containing protein. (451 aa)    
Predicted Functional Partners:
SEN48574.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.982
SEM89393.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.931
SEM84892.1
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).
   
0.889
SEL96563.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.807
SEL92934.1
Ferredoxin-NADP reductase.
     
 0.764
SEL98033.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
     
 0.764
SEM88939.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.751
SEL47850.1
Hypothetical protein.
 
 0.682
SEN43059.1
PAS domain S-box-containing protein.
 
  
 0.644
SEM78428.1
Glutamate dehydrogenase.
  
  
  0.601
Your Current Organism:
Nonomuraea pusilla
NCBI taxonomy Id: 46177
Other names: ATCC 27296, Actinomadura pusilla, BCRC 11619, CBS 262.72, CCRC 11619, CCRC:11619, CECT 3284, CIP 106954, DSM 43357, IFO 14684, IMET 9586, JCM 3144, KCTC 9278, Microtetraspora pusilla, N. pusilla, NBRC 14684, NCIMB 11116, NRRL B-16126, Nonomuria pusilla
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