STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN54868.1Two component transcriptional regulator, LuxR family. (223 aa)    
Predicted Functional Partners:
SEN54833.1
Signal transduction histidine kinase.
 
   0.891
SEL47850.1
Hypothetical protein.
   
 0.880
SEN00938.1
Signal transduction histidine kinase.
  
   0.653
SEN73633.1
Signal transduction histidine kinase.
  
   0.637
SEN77989.1
Signal transduction histidine kinase.
  
   0.610
SEK60645.1
Signal transduction histidine kinase.
 
   0.600
SEK34715.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
   0.594
SEL14799.1
Histidine kinase.
  
   0.594
SEL96301.1
Signal transduction histidine kinase.
  
   0.591
SEL27277.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
   
  0.589
Your Current Organism:
Nonomuraea pusilla
NCBI taxonomy Id: 46177
Other names: ATCC 27296, Actinomadura pusilla, BCRC 11619, CBS 262.72, CCRC 11619, CCRC:11619, CECT 3284, CIP 106954, DSM 43357, IFO 14684, IMET 9586, JCM 3144, KCTC 9278, Microtetraspora pusilla, N. pusilla, NBRC 14684, NCIMB 11116, NRRL B-16126, Nonomuria pusilla
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