STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN62247.1Zinc transporter, ZIP family. (244 aa)    
Predicted Functional Partners:
SEL18832.1
Hypothetical protein.
  
    0.487
SEM38892.1
NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains.
   
    0.480
SEK64613.1
Methylamine utilisation protein MauE.
 
 
 0.460
SEK90508.1
Hypothetical protein.
  
     0.450
SEL73544.1
Fusaric acid resistance protein-like.
  
    0.441
SEK68902.1
NADH dehydrogenase.
 
     0.438
SEK87515.1
Cytochrome c biogenesis protein CcdA.
   
    0.438
SEK99192.1
Cytochrome c biogenesis protein CcdA.
   
    0.438
SEL53783.1
Cytochrome c-type biogenesis protein.
   
    0.438
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
      
 0.422
Your Current Organism:
Nonomuraea pusilla
NCBI taxonomy Id: 46177
Other names: ATCC 27296, Actinomadura pusilla, BCRC 11619, CBS 262.72, CCRC 11619, CCRC:11619, CECT 3284, CIP 106954, DSM 43357, IFO 14684, IMET 9586, JCM 3144, KCTC 9278, Microtetraspora pusilla, N. pusilla, NBRC 14684, NCIMB 11116, NRRL B-16126, Nonomuria pusilla
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