STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN68085.1Putative Ig domain-containing protein. (1614 aa)    
Predicted Functional Partners:
SEM95712.1
uroporphyrinogen-III C-methyltransferase.
  
  
  0.738
SEM51885.1
Chitinase.
     
 0.710
SEN76840.1
PQQ-like domain-containing protein.
    
  0.682
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
  
  0.582
SEM14280.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
     
 0.557
SEK30170.1
Deoxyribonuclease NucA/NucB.
  
 
  0.466
SEK31046.1
Hypothetical protein.
  
 
  0.466
SEL72577.1
Right handed beta helix region.
  
 
  0.466
SEN11044.1
Ig-like domain-containing protein.
  
 
  0.466
SEN36090.1
RHS repeat-associated core domain-containing protein.
  
 
  0.466
Your Current Organism:
Nonomuraea pusilla
NCBI taxonomy Id: 46177
Other names: ATCC 27296, Actinomadura pusilla, BCRC 11619, CBS 262.72, CCRC 11619, CCRC:11619, CECT 3284, CIP 106954, DSM 43357, IFO 14684, IMET 9586, JCM 3144, KCTC 9278, Microtetraspora pusilla, N. pusilla, NBRC 14684, NCIMB 11116, NRRL B-16126, Nonomuria pusilla
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