STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_00139Signal peptidase 22 kDa subunit. (185 aa)    
Predicted Functional Partners:
AMSG_03146
Uncharacterized protein.
   
 0.985
AMSG_07102
Signal peptidase I.
   
 0.975
AMSG_03038
Inner membrane protease subunit 2.
   
 0.832
AMSG_05203
Mitochondrial inner membrane protease subunit 1.
   
 0.832
AMSG_01659
Integrin-alpha FG-GAP repeat-containing protein 2.
   
 0.832
AMSG_04171
Uncharacterized protein.
   
 
  0.770
AMSG_07037
Glycosyl transferase.
   
 
  0.582
AMSG_00046
GlcNAc transferase.
   
 
  0.569
AMSG_03110
Uncharacterized protein.
   
 
  0.569
AMSG_12121
Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.
   
 
  0.569
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.