STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_00290Ddx10 protein; Belongs to the DEAD box helicase family. (874 aa)    
Predicted Functional Partners:
AMSG_04359
NUC153 domain-containing protein.
   
 
 0.993
AMSG_06075
U3 small nucleolar RNA-associated protein.
   
 0.993
AMSG_04963
Uncharacterized protein.
   
  0.979
AMSG_05290
Nom1 protein.
   
 
 0.979
AMSG_01788
U3 snoRNP protein.
   
 0.979
AMSG_12093
Uncharacterized protein.
   
 0.977
AMSG_00132
U3 small nucleolar RNA-associated protein 18.
   
 0.976
AMSG_05718
Nucleolar complex protein 14.
   
 0.958
AMSG_01496
rRNA biogenesis protein RRP5.
   
 0.935
AMSG_08211
WD40 repeat-containing protein.
   
  0.927
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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