STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_02829MSC domain-containing protein. (567 aa)    
Predicted Functional Partners:
AMSG_08314
RNA-binding protein cabeza.
    
 0.750
AMSG_01562
RanBP2-type domain-containing protein.
    
 0.750
AMSG_08963
ANK_REP_REGION domain-containing protein.
    
 0.736
AMSG_09203
SET domain-containing protein.
   
 0.728
AMSG_10005
Retinoblastoma-binding protein 5.
    
 0.724
AMSG_00229
SPRY domain-containing protein.
    
 0.720
AMSG_08774
Uncharacterized protein.
    
  0.707
AMSG_10940
Allatostatin protein.
    
 0.688
AMSG_01851
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.667
AMSG_06254
Nucleoporin_C domain-containing protein.
    
 0.663
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.