STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_02955F-box/LRR-repeat protein 20. (619 aa)    
Predicted Functional Partners:
AMSG_00283
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.738
AMSG_11828
Cullin domain-containing protein; Belongs to the cullin family.
    
  0.552
AMSG_04777
Cullin-2; Belongs to the cullin family.
    
  0.552
AMSG_01998
Cullin-3; Belongs to the cullin family.
    
  0.552
AMSG_00122
NEDD8 protein.
    
  0.526
AMSG_06761
UV excision repair protein Rad23.
    
  0.502
AMSG_07946
Ubiquitin C.
    
  0.487
AMSG_08067
Ubiquitin/ribosomal protein S27 fusion protein.
    
  0.487
AMSG_12202
Uncharacterized protein.
    
  0.487
AMSG_12328
Uncharacterized protein.
    
  0.487
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.