STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_02987DEAD box ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (652 aa)    
Predicted Functional Partners:
AMSG_01540
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.848
AMSG_03605
Uncharacterized protein.
   
 0.800
AMSG_11717
Uncharacterized protein.
  
 0.788
AMSG_11670
CP-type G domain-containing protein.
  
 0.784
AMSG_05429
RRM domain-containing protein.
   
 0.768
AMSG_10074
ATP-dependent RNA helicase DBP5.
  
0.761
AMSG_09035
Splicing factor 3B subunit 1.
   
 0.748
AMSG_06912
DEAD box polypeptide 52.
  
0.739
AMSG_02318
Ribosome biogenesis protein WDR12.
   
 0.736
AMSG_01840
ANAPC4_WD40 domain-containing protein.
    
 0.732
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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