STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_03102Uncharacterized protein. (592 aa)    
Predicted Functional Partners:
AMSG_08067
Ubiquitin/ribosomal protein S27 fusion protein.
   
 0.700
AMSG_12067
Uncharacterized protein.
    
 0.682
AMSG_02492
Ubiquitin-conjugating enzyme family protein.
    
 0.665
AMSG_01478
Uncharacterized protein.
    
 0.665
AMSG_00122
NEDD8 protein.
   
  0.638
AMSG_03678
Signal transducer and activator of transcription.
   
 0.638
AMSG_02036
Uncharacterized protein.
   
 0.638
AMSG_07946
Ubiquitin C.
   
  0.631
AMSG_12202
Uncharacterized protein.
   
  0.631
AMSG_11874
Ubiquitin-like domain-containing protein.
    
  0.606
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.