STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_03189Voltage-gated ion channel superfamily protein. (1461 aa)    
Predicted Functional Partners:
AMSG_01618
Flagellar associated protein.
    
 0.757
AMSG_04245
Ift122 protein.
   
 0.753
AMSG_07106
Ift140 protein.
    
 0.748
AMSG_11063
WD repeat protein 19.
    
 0.748
AMSG_00284
Ion transporter.
  
0.696
AMSG_11056
Cation channel sperm-associated protein 4.
  
0.693
AMSG_03239
GRAM domain-containing protein.
    
  0.673
AMSG_10734
VASt domain-containing protein.
    
  0.673
AMSG_11087
VASt domain-containing protein.
    
  0.673
AMSG_10456
Ion transporter.
   
0.630
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.