AMSG_03402 protein (Thecamonas trahens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMSG_03402

ATP-binding cassette. (1386 aa)

Predicted Functional Partners:

AMSG_04617

0.777

AMSG_08774

0.661

KATNAL2

0.632

AMSG_08705

0.608

AMSG_09200

0.577

AMSG_09485

0.572

AMSG_09120

0.570

AMSG_10041

0.565

AMSG_05936

0.549

AMSG_03585

0.548

Your Current Organism:

Thecamonas trahens

NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMSG_03402	AMSG_03585	A0A0L0D3T2	A0A0L0D472	ATP-binding cassette.	Uncharacterized protein.	0.548
AMSG_03402	AMSG_04617	A0A0L0D3T2	A0A0L0D918	ATP-binding cassette.	IRK_C domain-containing protein.	0.777
AMSG_03402	AMSG_05936	A0A0L0D3T2	A0A0L0DBF2	ATP-binding cassette.	26S proteasome non-ATPase regulatory subunit 2.	0.549
AMSG_03402	AMSG_08705	A0A0L0D3T2	A0A0L0DL93	ATP-binding cassette.	Acetyl-CoA carboxylase.	0.608
AMSG_03402	AMSG_08774	A0A0L0D3T2	A0A0L0DMM4	ATP-binding cassette.	Uncharacterized protein.	0.661
AMSG_03402	AMSG_09120	A0A0L0D3T2	A0A0L0DLN0	ATP-binding cassette.	AGC/PKA protein kinase.	0.570
AMSG_03402	AMSG_09200	A0A0L0D3T2	A0A0L0DKY8	ATP-binding cassette.	Uncharacterized protein.	0.577
AMSG_03402	AMSG_09485	A0A0L0D3T2	A0A0L0DQQ4	ATP-binding cassette.	t-SNARE family protein; Belongs to the syntaxin family.	0.572
AMSG_03402	AMSG_10041	A0A0L0D3T2	A0A0L0DPK9	ATP-binding cassette.	Carbohydrate-binding module family 48 protein.	0.565
AMSG_03402	KATNAL2	A0A0L0D3T2	A0A0L0DVJ4	ATP-binding cassette.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.632
AMSG_03585	AMSG_03402	A0A0L0D472	A0A0L0D3T2	Uncharacterized protein.	ATP-binding cassette.	0.548
AMSG_03585	AMSG_09120	A0A0L0D472	A0A0L0DLN0	Uncharacterized protein.	AGC/PKA protein kinase.	0.479
AMSG_04617	AMSG_03402	A0A0L0D918	A0A0L0D3T2	IRK_C domain-containing protein.	ATP-binding cassette.	0.777
AMSG_05936	AMSG_03402	A0A0L0DBF2	A0A0L0D3T2	26S proteasome non-ATPase regulatory subunit 2.	ATP-binding cassette.	0.549
AMSG_05936	KATNAL2	A0A0L0DBF2	A0A0L0DVJ4	26S proteasome non-ATPase regulatory subunit 2.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.999
AMSG_08705	AMSG_03402	A0A0L0DL93	A0A0L0D3T2	Acetyl-CoA carboxylase.	ATP-binding cassette.	0.608
AMSG_08705	AMSG_10041	A0A0L0DL93	A0A0L0DPK9	Acetyl-CoA carboxylase.	Carbohydrate-binding module family 48 protein.	0.797
AMSG_08705	KATNAL2	A0A0L0DL93	A0A0L0DVJ4	Acetyl-CoA carboxylase.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.599
AMSG_08774	AMSG_03402	A0A0L0DMM4	A0A0L0D3T2	Uncharacterized protein.	ATP-binding cassette.	0.661
AMSG_09120	AMSG_03402	A0A0L0DLN0	A0A0L0D3T2	AGC/PKA protein kinase.	ATP-binding cassette.	0.570