STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_00206Farnesyltranstransferase; Belongs to the FPP/GGPP synthase family. (386 aa)    
Predicted Functional Partners:
AMSG_12195
Uncharacterized protein.
  
 0.908
AMSG_01073
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
  
 
 0.890
AMSG_08047
Isopentenyl-diphosphate Delta-isomerase 1.
  
 
 0.889
AMSG_01472
Phytoene desaturase.
  
 0.870
AMSG_10987
Farnesyl-diphosphate farnesyltransferase.
  
 0.870
AMSG_05970
Farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.
     
 0.857
AMSG_11778
Uncharacterized protein.
     
0.854
AMSG_11736
Alkyl transferase; Belongs to the UPP synthase family.
  
 
 0.840
AMSG_03098
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
    
 0.838
AMSG_04339
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
    
 0.838
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.