STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_03568SH3 domain-containing protein. (1258 aa)    
Predicted Functional Partners:
AMSG_00005
Ribosomal protein rpl31.
   
 0.897
AMSG_01285
60S ribosomal protein L30.
   
 0.893
AMSG_03569
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
 0.889
AMSG_06187
Ribosomal protein L35.
   
 0.885
AMSG_05751
60S ribosomal protein L33.
   
 0.883
AMSG_01742
60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.
   
 0.881
AMSG_02262
60S ribosomal protein L24.
   
 0.880
AMSG_06983
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.879
AMSG_08797
50S ribosomal protein L32.
  
 0.879
AMSG_07943
60S ribosomal protein L44 Q; Belongs to the eukaryotic ribosomal protein eL42 family.
   
 0.874
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.