STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_02746DNA-binding protein HGH1. (437 aa)    
Predicted Functional Partners:
AMSG_00901
Tetratricopeptide repeat protein 4.
   
 
 0.994
AMSG_10324
tRNA (Guanine-N(7)-)-methyltransferase subunit WDR4.
   
    0.726
AMSG_08211
WD40 repeat-containing protein.
   
   0.721
AMSG_07820
Brix domain-containing protein 1.
   
    0.720
AMSG_00013
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
    0.708
AMSG_01318
Ribosome biogenesis protein RLP24.
   
    0.702
AMSG_02654
Protein MAK16 homolog; Belongs to the MAK16 family.
   
    0.695
AMSG_01057
Bystin.
   
    0.686
AMSG_05799
WD repeat protein SAZD.
   
    0.635
AMSG_01122
RNA-binding protein 28.
   
   0.627
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.