STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_02805E3 ubiquitin-protein ligase RNF123. (1253 aa)    
Predicted Functional Partners:
AMSG_02514
Ubiquitin-activating enzyme E1.
    
 0.987
AMSG_02028
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
    
 0.987
AMSG_07729
Uncharacterized protein.
   
 0.835
AMSG_02280
Ubiquitin-associated domain-containing protein 1.
   
 
 0.794
AMSG_01733
Serine-arginine protein 55.
   
 0.789
AMSG_05025
RRM domain-containing protein.
   
 0.754
AMSG_01941
Uncharacterized protein.
   
 0.729
AMSG_00312
RNA recognition domain-containing protein containing protein.
   
 0.723
AMSG_01502
Uncharacterized protein.
   
 0.688
AMSG_07672
E3 ubiquitin-protein ligase UPL3.
   
 0.630
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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