STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_02532Solute carrier family 47. (533 aa)    
Predicted Functional Partners:
AMSG_03345
Hydroxyacyl dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.752
AMSG_08685
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.752
AMSG_02980
TATA-box-binding protein 2.
   
  
 0.714
AMSG_04557
Ribonuclease P/MRP protein subunit POP5.
     
 0.705
AMSG_12128
Uncharacterized protein.
   
 
 0.699
AMSG_04704
Ribonuclease P/MRP 30kDa subunit.
   
 
 0.664
AMSG_02259
Ribonuclease P protein subunit p29.
     
 0.649
AMSG_07694
CYCLIN domain-containing protein; Belongs to the cyclin family.
   
  
 0.640
AMSG_01472
Phytoene desaturase.
   
 
 0.539
AMSG_10987
Farnesyl-diphosphate farnesyltransferase.
   
 
 0.539
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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