STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_03239GRAM domain-containing protein. (255 aa)    
Predicted Functional Partners:
AMSG_03029
Voltage-gated ion channel superfamily protein.
    
  0.673
AMSG_03189
Voltage-gated ion channel superfamily protein.
    
  0.673
AMSG_03287
Egg laying defective protein 19.
    
  0.673
AMSG_03223
Ion transporter.
    
  0.673
AMSG_04150
Cation channel sperm-associated protein 3.
    
  0.673
AMSG_04485
Tetratricopeptide repeat protein 21B.
    
  0.673
AMSG_05523
Voltage-gated Ion Channel superfamily.
    
  0.673
AMSG_06840
Two-pore calcium channel 3.
    
  0.673
AMSG_06944
Uncharacterized protein.
    
  0.673
AMSG_06300
Voltage-dependent T-type calcium channel subunit alpha-1I.
    
  0.673
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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