STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_04128Rab GDP dissociation inhibitor; Belongs to the Rab GDI family. (430 aa)    
Predicted Functional Partners:
AMSG_00807
VPS9 domain-containing protein.
    
 0.990
AMSG_03083
Rab18/RabC-family small GTPase.
   
 0.964
AMSG_02797
Rab7 protein.
    
 0.914
AMSG_00989
GTP-binding protein ypt7.
    
 0.914
AMSG_10422
Ras-like protein Rab-14.
   
 0.869
AMSG_05260
Rab21.
   
 0.867
AMSG_04880
Member Ras oncogene family RAB22A.
   
 0.830
AMSG_06370
Ras-like protein Rab-5C.
   
 0.830
AMSG_07909
Rab 5.
   
 0.830
AMSG_12286
Guanylate cyclase domain-containing protein.
   
 0.830
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.