STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_11773EamA domain-containing protein. (295 aa)    
Predicted Functional Partners:
AMSG_11736
Alkyl transferase; Belongs to the UPP synthase family.
  
 
 0.532
AMSG_02754
Peptidase; Belongs to the peptidase M24B family.
    
 0.453
AMSG_05620
Xaa-Pro aminopeptidase 3.
    
 0.453
AMSG_07630
Xaa-Pro dipeptidase.
    
 0.453
AMSG_08163
Xaa-Pro dipeptidase.
    
 0.453
AMSG_03098
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
    
  0.444
AMSG_00206
Farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
    
  0.444
AMSG_11778
Uncharacterized protein.
    
  0.444
AMSG_04339
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
    
  0.444
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.