STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_04310tRNA pseudouridine synthase. (283 aa)    
Predicted Functional Partners:
AMSG_08554
50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.778
AMSG_00753
Burgundy.
   
 
  0.684
AMSG_07977
Methylase MraW.
   
 
 0.674
AMSG_00173
Rhodanese domain-containing protein.
   
 
 0.637
AMSG_00899
DNA-directed RNA polymerase I and III subunit rpac1.
  
  
 0.628
AMSG_08250
RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein.
  
  
 0.628
AMSG_04577
Methyltransferase type 12.
  
   0.608
AMSG_05245
PseudoU_synth_2 domain-containing protein.
  
  
 0.605
AMSG_10324
tRNA (Guanine-N(7)-)-methyltransferase subunit WDR4.
   
 
 0.591
AMSG_10349
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.567
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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