STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_04702Uncharacterized protein. (390 aa)    
Predicted Functional Partners:
AMSG_00265
SURF6 domain-containing protein.
   
   0.718
AMSG_02654
Protein MAK16 homolog; Belongs to the MAK16 family.
   
  
 0.637
AMSG_07324
rRNA-processing protein FCF2.
   
  
 0.562
AMSG_03605
Uncharacterized protein.
   
    0.530
AMSG_08443
CCAAT/enhancer binding protein zeta.
   
   0.498
AMSG_01122
RNA-binding protein 28.
   
   0.495
AMSG_06981
Uncharacterized protein.
   
   0.488
AMSG_08542
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
   0.488
AMSG_03077
Apoptosis-antagonizing transcription factor.
   
   0.473
AMSG_02596
DUF2431 domain-containing protein.
   
  
 0.465
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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