STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_05345Polymorphic outer membrane protein. (12245 aa)    
Predicted Functional Partners:
AMSG_00443
Uncharacterized protein.
   
 0.843
AMSG_08002
40S ribosomal protein S14.
   
  0.702
AMSG_09742
Uncharacterized protein.
    
 0.659
AMSG_00235
Uncharacterized protein.
    
0.633
AMSG_03398
Uncharacterized protein.
    
 0.633
AMSG_03684
Uncharacterized protein.
    
 0.633
AMSG_00589
Laminin EGF-like domain-containing protein.
    
0.633
AMSG_05636
Uncharacterized protein.
    
0.633
AMSG_05818
C-reactive protein 1.1.
    
0.633
AMSG_07310
Sushi domain-containing protein.
    
 0.633
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.