STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_05542Tyrosine--tRNA ligase. (477 aa)    
Predicted Functional Partners:
AMSG_06447
MRS-1 protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.920
AMSG_05953
Prolyl-tRNA synthetase.
  
  
 0.895
AMSG_10784
NEDD8-activating enzyme E1 catalytic subunit.
      0.894
AMSG_10685
Tyrosyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
 0.864
AMSG_09991
Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.844
AMSG_04908
GU4 nucleic-binding protein.
  
 0.829
AMSG_10717
UPF0082 protein.
 
 
 0.798
AMSG_12293
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
  
  
 0.752
AMSG_05297
Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.713
AMSG_10236
Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.713
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.