STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_05570Carboxyl transferase. (595 aa)    
Predicted Functional Partners:
AMSG_07870
3-methylcrotonoyl-CoA carboxylase.
 
 0.986
AMSG_00052
Carbamoyl-phosphate synthase subunit L ATP-binding.
 
 0.985
AMSG_00475
Propionyl-CoA carboxylase subunit alpha.
 
 0.985
AMSG_03644
Negative elongation factor D.
  
 0.866
AMSG_02163
Sterol-binding domain-containing protein.
  
 
 0.841
AMSG_08179
4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.833
AMSG_09116
Hydroxymethylglutaryl-CoA lyase.
 
 0.815
AMSG_06205
2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
  
 
 0.763
AMSG_07728
Hydroxyacyl-Coenzyme A dehydrogenase.
  
 
 0.754
AMSG_00665
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
  
 
 0.750
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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