STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_06049Uncharacterized protein. (563 aa)    
Predicted Functional Partners:
AMSG_11428
Hydroxylamine reductase.
   
 0.986
AMSG_02994
AAA_12 domain-containing protein.
   
 0.846
AMSG_08464
DNA-binding protein SMUBP-2.
   
 0.846
AMSG_11148
tRNA-splicing endonuclease positive effector.
   
 0.846
AMSG_06124
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
   
 0.758
AMSG_07404
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
   
 0.758
AMSG_09108
ATP-dependent DNA helicase 2 subunit ku80.
    
 
 0.758
AMSG_01984
DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.
   
 0.758
AMSG_12366
MIF4G domain-containing protein.
   
 0.743
AMSG_06102
ATP-dependent DNA helicase 2 subunit 1.
    
 
 0.724
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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