AMSG_00807 protein (Thecamonas trahens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMSG_00807

VPS9 domain-containing protein. (731 aa)

Predicted Functional Partners:

AMSG_05260

0.998

AMSG_04880

0.998

AMSG_06370

0.998

AMSG_07909

0.998

AMSG_12286

0.998

AMSG_04128

0.990

AMSG_09908

0.990

KATNAL2

0.990

AMSG_00579

0.987

AMSG_06213

0.987

Your Current Organism:

Thecamonas trahens

NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMSG_00579	AMSG_00807	A0A0L0D8Y0	A0A0L0DEC4	Rab protein geranylgeranyltransferase component A 2.	VPS9 domain-containing protein.	0.987
AMSG_00579	AMSG_04128	A0A0L0D8Y0	A0A0L0D680	Rab protein geranylgeranyltransferase component A 2.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.592
AMSG_00579	AMSG_04880	A0A0L0D8Y0	A0A0L0DAV8	Rab protein geranylgeranyltransferase component A 2.	Member Ras oncogene family RAB22A.	0.682
AMSG_00579	AMSG_05260	A0A0L0D8Y0	A0A0L0DAJ9	Rab protein geranylgeranyltransferase component A 2.	Rab21.	0.759
AMSG_00579	AMSG_06370	A0A0L0D8Y0	A0A0L0DDC5	Rab protein geranylgeranyltransferase component A 2.	Ras-like protein Rab-5C.	0.682
AMSG_00579	AMSG_07909	A0A0L0D8Y0	A0A0L0DI94	Rab protein geranylgeranyltransferase component A 2.	Rab 5.	0.682
AMSG_00579	AMSG_12286	A0A0L0D8Y0	A0A0L0DP62	Rab protein geranylgeranyltransferase component A 2.	Guanylate cyclase domain-containing protein.	0.682
AMSG_00807	AMSG_00579	A0A0L0DEC4	A0A0L0D8Y0	VPS9 domain-containing protein.	Rab protein geranylgeranyltransferase component A 2.	0.987
AMSG_00807	AMSG_04128	A0A0L0DEC4	A0A0L0D680	VPS9 domain-containing protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.990
AMSG_00807	AMSG_04880	A0A0L0DEC4	A0A0L0DAV8	VPS9 domain-containing protein.	Member Ras oncogene family RAB22A.	0.998
AMSG_00807	AMSG_05260	A0A0L0DEC4	A0A0L0DAJ9	VPS9 domain-containing protein.	Rab21.	0.998
AMSG_00807	AMSG_06213	A0A0L0DEC4	A0A0L0DCR4	VPS9 domain-containing protein.	Plant adhesion molecule 1.	0.987
AMSG_00807	AMSG_06370	A0A0L0DEC4	A0A0L0DDC5	VPS9 domain-containing protein.	Ras-like protein Rab-5C.	0.998
AMSG_00807	AMSG_07909	A0A0L0DEC4	A0A0L0DI94	VPS9 domain-containing protein.	Rab 5.	0.998
AMSG_00807	AMSG_09908	A0A0L0DEC4	A0A0L0DQ43	VPS9 domain-containing protein.	DH domain-containing protein.	0.990
AMSG_00807	AMSG_12286	A0A0L0DEC4	A0A0L0DP62	VPS9 domain-containing protein.	Guanylate cyclase domain-containing protein.	0.998
AMSG_00807	KATNAL2	A0A0L0DEC4	A0A0L0DVJ4	VPS9 domain-containing protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.990
AMSG_04128	AMSG_00579	A0A0L0D680	A0A0L0D8Y0	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	Rab protein geranylgeranyltransferase component A 2.	0.592
AMSG_04128	AMSG_00807	A0A0L0D680	A0A0L0DEC4	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	VPS9 domain-containing protein.	0.990
AMSG_04128	AMSG_04880	A0A0L0D680	A0A0L0DAV8	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	Member Ras oncogene family RAB22A.	0.830