STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_00727Ribonucleoprotein A. (240 aa)    
Predicted Functional Partners:
AMSG_05025
RRM domain-containing protein.
  
 
 0.867
AMSG_00312
RNA recognition domain-containing protein containing protein.
  
 
 0.840
AMSG_06080
Cytoplasmic RNA-binding protein.
  
 0.795
AMSG_03761
Spliceosomal protein on the X.
  
 
 0.772
AMSG_09035
Splicing factor 3B subunit 1.
   
 0.747
AMSG_04178
Small nuclear ribonucleoprotein SmG.
   
 0.746
AMSG_01733
Serine-arginine protein 55.
    
 0.743
AMSG_02462
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.740
AMSG_11749
Sm domain-containing protein.
   
 0.730
AMSG_11215
SF3B2 protein.
   
 0.730
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.