STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_06071Uncharacterized protein. (458 aa)    
Predicted Functional Partners:
AMSG_03715
Nucleolar protein Nop56.
   
 
 0.751
AMSG_09053
rRNA 2'-O-methyltransferase fibrillarin.
   
 
 0.691
AMSG_12230
Asp_Arg_Hydrox domain-containing protein.
   
 
 0.691
AMSG_06080
Cytoplasmic RNA-binding protein.
  
 
  0.640
AMSG_05457
Pin2-interacting protein X1.
   
 
 0.546
AMSG_01455
G-patch domain-containing protein.
   
 
 0.546
AMSG_11670
CP-type G domain-containing protein.
   
 
 0.541
AMSG_03754
PRMT-1 protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.
   
 
 0.517
AMSG_01393
Protein arginine N-methyltransferase 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.
   
 
 0.517
AMSG_07820
Brix domain-containing protein 1.
   
   0.512
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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