STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_06645RING-type domain-containing protein. (532 aa)    
Predicted Functional Partners:
AMSG_10415
Replication protein A subunit.
   
 
 0.869
AMSG_00041
3'-5' exonuclease.
    
 
 0.572
AMSG_00980
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
    
 
 0.572
AMSG_04083
Ion_trans domain-containing protein.
     
 0.534
AMSG_03918
Heat shock protein.
    
  0.531
AMSG_05390
Uncharacterized protein.
    
  0.531
AMSG_09389
Heat shock protein 90A.
    
  0.531
AMSG_00355
Glucose-regulated protein 94.
    
  0.520
AMSG_01660
Uncharacterized protein.
      
 0.495
AMSG_08467
UPF0361 protein yoqW.
      
 0.434
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.