STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_06630NB-ARC domain-containing protein. (2720 aa)    
Predicted Functional Partners:
AMSG_03890
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
   
 0.998
AMSG_07900
Uncharacterized protein.
    
 0.998
AMSG_02492
Ubiquitin-conjugating enzyme family protein.
   
 0.993
AMSG_01478
Uncharacterized protein.
   
 0.993
AMSG_09728
TKL protein kinase.
    
0.851
AMSG_09750
Uncharacterized protein.
    
 0.807
AMSG_00704
60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.
    
  0.803
AMSG_05329
DEAD/DEAH box RNA helicase.
    
 0.800
AMSG_05074
RNA pol II accessory factor.
    
 0.774
AMSG_04775
Uncharacterized protein.
   
 0.760
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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