STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_06985Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function. (682 aa)    
Predicted Functional Partners:
AMSG_02876
Uncharacterized protein.
   
 0.997
AMSG_08388
Uncharacterized protein.
   
 0.997
AMSG_01357
Uncharacterized protein.
    
 0.997
AMSG_01364
Uncharacterized protein.
    
 0.996
AMSG_03993
Cog4 domain-containing protein.
   
 0.953
AMSG_06025
Uncharacterized protein.
   
 0.953
AMSG_11143
Syntaxin-16.
    
 0.852
AMSG_04427
Syntaxin-5.
    
 0.812
AMSG_12316
Uncharacterized protein.
    
 0.812
AMSG_04449
ADP-ribosylation factor-like protein 1; Belongs to the small GTPase superfamily. Arf family.
   
 0.802
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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