STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_11974Uncharacterized protein. (1015 aa)    
Predicted Functional Partners:
AMSG_10940
Allatostatin protein.
    
 0.987
AMSG_08314
RNA-binding protein cabeza.
   
 0.986
AMSG_01562
RanBP2-type domain-containing protein.
   
 0.986
AMSG_02432
Uncharacterized protein.
   
 0.822
AMSG_12033
Uncharacterized protein.
    
 0.797
AMSG_09472
Histone chaperone.
    
 0.788
AMSG_03940
40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.
   
 
 0.759
AMSG_00122
NEDD8 protein.
   
  0.713
AMSG_06622
Integrin beta.
    
 0.713
AMSG_08375
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
   0.712
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.