STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_12073MPN domain-containing protein. (703 aa)    
Predicted Functional Partners:
AMSG_04642
COP9 signalosome complex subunit 4.
   
 0.999
AMSG_01424
COP9 signalosome complex subunit 2.
   
 0.999
AMSG_01666
COP9 signalosome complex subunit 3.
   
 0.999
AMSG_02009
COP9 signalosome complex subunit 7a.
    
 0.989
AMSG_00072
UBX domain-containing protein.
   
 0.988
AMSG_11209
COP9 signalosome complex subunit 5a.
   
 0.976
AMSG_00122
NEDD8 protein.
   
 0.974
AMSG_11898
Uncharacterized protein.
   
 0.964
AMSG_05411
Cullin 4; Belongs to the cullin family.
    
 0.894
AMSG_09235
Proteasome 26S subunit.
   
 0.893
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.