STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_007742OG-Fe(II) oxygenase family Oxidoreductase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (298 aa)    
Predicted Functional Partners:
AMSG_12285
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
     
 0.684
AMSG_07327
Ornithine aminotransferase.
     
 0.646
AMSG_04830
Alcohol dehydrogenase.
   
 
 0.638
AMSG_10089
ACC synthase.
     
 0.625
AMSG_03195
Catechol O-methyltransferase.
     
 0.624
AMSG_02797
Rab7 protein.
    
  0.570
AMSG_00989
GTP-binding protein ypt7.
    
  0.570
AMSG_08255
Amine oxidase.
    
 0.556
AMSG_08759
Cyclopropane-fatty-acyl-phospholipid synthase.
    
 0.556
AMSG_03364
Ribosomal S17.
   
 0.544
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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