STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_07533Uncharacterized protein. (89 aa)    
Predicted Functional Partners:
AMSG_00395
Uncharacterized protein.
    
 0.953
AMSG_10501
Uncharacterized protein.
    
  0.938
AMSG_11791
VWFA domain-containing protein.
    
 0.800
AMSG_01034
Integrator complex subunit 11.
   
 0.673
AMSG_10575
RNA polymerase II subunit A domain phosphatase SSU72.
   
 
  0.621
AMSG_10427
Uncharacterized protein.
     
 0.606
AMSG_02344
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.596
AMSG_00318
Cleavage and polyadenylation specificity factor subunit 4.
     
 0.589
AMSG_04435
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 
  0.565
AMSG_07003
Cleavage and polyadenylation specificity factor subunit 2.
    
  0.565
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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